About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91192673_91197867_F

Intron Information:

Intron Rank:
147855
Intron Class:
major
Intron Phase:
Intron Coordinates:
91192673 - 91197867
Intron Length:
5195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATTTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
53
0.17
1.7
70.58
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029588
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017461
91132781 - 91197914
65134