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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9125668_9130661_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9125668 - 9130661
Intron Length:
4994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTTATTATTC
Flanking Amino Acid:
DQRPGMVQTKEQFEFALTAV
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
53.5
0.09
1.8
67.82
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743