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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91284821_91294072_F

Intron Information:

Intron Rank:
132819
Intron Class:
major
Intron Phase:
Intron Coordinates:
91284821 - 91294072
Intron Length:
9252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
79.5
29.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.7
0.67
0.9
72.6
42.4
Minor 5ss
43.7
-0.7
2.9
59.8
40
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028400
91284308 - 91295337
11030