Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91315720_91321442_F

Intron Information:

Intron Rank:

131425

Intron Class:

major

Intron Phase:

Intron Coordinates:

91315720 - 91321442

Intron Length:

5723

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGCTCATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGTTTTTCATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

100

1.24

0.5

100

Major PPT

79.1

0.66

0.9

70.4

39.9

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

55.2

0.24

1.8

76.37

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023087

91315400 - 91348591

33192