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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91321496_91346040_F

Intron Information:

Intron Rank:
131426
Intron Class:
major
Intron Phase:
Intron Coordinates:
91321496 - 91346040
Intron Length:
24545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTCTTTGCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
83.9
28.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.4
0.57
0.8
69.5
29.9
Minor 5ss
30.4
-2.2
3.2
39
46.4
Minor BPS
44.1
-0.4
2.1
53.98
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020580
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023087
91315400 - 91348591
33192