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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91322303_91323847_R

Intron Information:

Intron Rank:
148503
Intron Class:
major
Intron Phase:
Intron Coordinates:
91322303 - 91323847
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATAC
5'SS Class:
major
3'SS Sequence:
TTCTTGCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
CATACATAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
64.7
36.1
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
82.7
0.74
0.8
76.5
32.3
Minor 5ss
49.9
-0
2.5
67.6
43.7
Minor BPS
45.3
-0.3
2
56.01
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027297
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037089
91322159 - 91325329
3171