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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91346151_91348561_F

Intron Information:

Intron Rank:
131427
Intron Class:
major
Intron Phase:
Intron Coordinates:
91346151 - 91348561
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
ACCATTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.9
0.54
0.9
70
39.5
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
55.9
0.18
2.1
77.56
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020580
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023087
91315400 - 91348591
33192