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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_914440_916844_F

Intron Information:

Intron Rank:
148145
Intron Class:
major
Intron Phase:
Intron Coordinates:
914440 - 916844
Intron Length:
2405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTTTCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
78.4
0.64
0.9
69.2
41.8
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
87.7
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041833
914338 - 917775
3438