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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9146277_9148320_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9146277 - 9148320
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TAGGCCTTATTT
Flanking Amino Acid:
GRSCPVVVHCSDGAGRSGTY
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
76.2
0.65
1
67
39.8
Major PPT
79.3
0.66
1
76.5
37.5
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
59.1
0.36
1.7
72.72
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743