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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9148375_9153416_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9148375 - 9153416
Intron Length:
5042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATGCTTAATT
Flanking Amino Acid:
ASTRSLLDFRRKVNKCYRGR
Intron Amino Acid Position:
984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
69.8
0.7
1.7
83.26
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743