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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9153584_9154705_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9153584 - 9154705
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTAAA
5'SS Class:
major
3'SS Sequence:
CTCTGTGGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
AATCCCTGATCC
Flanking Amino Acid:
EGSNLYHIYEVNLVSEHIWC
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
74.3
38
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
65.7
0.35
1
60.8
40.2
Minor 5ss
39.5
-1.2
2.9
51
45.5
Minor BPS
53.5
0.09
1.7
65.13
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743