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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9154826_9166963_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9154826 - 9166963
Intron Length:
12138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACAAT
U12 Branch Point Sequence:
GCAGTCACAATG
Flanking Amino Acid:
LPATVADFWQMVWENGCVVI
Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
52.6
0.07
1.4
61.3
41.4
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
40.3
-0.8
1.8
37.5
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743