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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_916127_916844_F

Intron Information:

Intron Rank:
148143
Intron Class:
major
Intron Phase:
Intron Coordinates:
916127 - 916844
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTTTCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
78.4
0.64
0.9
69.2
41.8
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
87.7
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032999
916049 - 917775
1727