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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_917188_923027_F

Intron Information:

Intron Rank:
148147
Intron Class:
major
Intron Phase:
Intron Coordinates:
917188 - 923027
Intron Length:
5840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CATTACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
71.2
34.5
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
79.2
0.66
0.8
69.6
36.7
Minor 5ss
30.8
-2.2
2.9
35.8
34.5
Minor BPS
66.7
0.6
1.6
79.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046628
916741 - 923274
6534