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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91745028_91750903_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91745028 - 91750903
Intron Length:
5876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AAATTGCCAACC
Flanking Amino Acid:
LHPTQRQLPKGSPYDAHTTG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
63.9
37.1
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
87.3
0.84
0.8
81
36.6
Minor 5ss
51.2
0.04
2.4
67.5
43.9
Minor BPS
40.6
-0.7
2.3
51.83
38.6

Associated Gene:

Gene:
IRX2
Ensembl Gene ID:
ENSAPLG00000024367
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048352
91741702 - 91750942
9241