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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9182259_9206854_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9182259 - 9206854
Intron Length:
24596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTGG
5'SS Class:
major
3'SS Sequence:
CTTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCTTTTATT
Flanking Amino Acid:
MDISTGHMILSYMEDHLKNK
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
63.1
43.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.9
0.87
0.7
81.1
35.5
Minor 5ss
36.3
-1.6
3.3
43.6
46
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743