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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92289004_92289393_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92289004 - 92289393
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTTCCTTCCTC
Flanking Amino Acid:
LKSPFQPVRDNSLAQQEGTP
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.7
33.3
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
79.7
0.67
0.7
73.5
24.7
Minor 5ss
40.1
-1.1
2.9
49.5
41.1
Minor BPS
47
-0.2
3.6
77.77
38.8

Associated Gene:

Gene:
IRX1
Ensembl Gene ID:
ENSAPLG00000021490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039323
92284635 - 92289519
4885