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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92289004_92312000_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92289004 - 92312000
Intron Length:
22997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTCTTGATC
Flanking Amino Acid:
LKSPFQPVRDNACALLCGVK
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.7
33.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.1
0.68
0.9
73.1
36.4
Minor 5ss
40.1
-1.1
2.9
49.5
41.1
Minor BPS
73.9
0.73
1.1
76.61
34.1

Associated Gene:

Gene:
IRX1
Ensembl Gene ID:
ENSAPLG00000021490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042352
92284668 - 92312055
27388