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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92643108_92664376_R

Intron Information:

Intron Rank:
140336
Intron Class:
major
Intron Phase:
Intron Coordinates:
92643108 - 92664376
Intron Length:
21269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
67.2
0.39
1
63.8
36.9
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
79.4
1
1.5
96.76
27.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022881
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027838
92642994 - 92665258
22265