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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92664435_92664780_R

Intron Information:

Intron Rank:
140337
Intron Class:
major
Intron Phase:
Intron Coordinates:
92664435 - 92664780
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TATTTCTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
64.9
0.55
1.4
80.12
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022881
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027838
92642994 - 92665258
22265