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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92699163_92701864_R

Intron Information:

Intron Rank:
129861
Intron Class:
major
Intron Phase:
Intron Coordinates:
92699163 - 92701864
Intron Length:
2702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTCTTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.3
0.79
0.8
82.1
34.6
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
69.6
0.7
1.1
82.22
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017060
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029497
92698967 - 92712969
14003