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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92702579_92704897_R

Intron Information:

Intron Rank:
129865
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
92702579 - 92704897
Intron Length:
2319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GAGGTCACCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATTTTTTTGAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
48
-0.1
1.1
42
37.3
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
56.3
0.05
1.7
63.54
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017060
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031126
92702272 - 92712984
10713