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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92704987_92712891_R

Intron Information:

Intron Rank:
129860
Intron Class:
major
Intron Phase:
Intron Coordinates:
92704987 - 92712891
Intron Length:
7905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTATC
5'SS Class:
major
3'SS Sequence:
TATTGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
72.5
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.8
0.65
0.9
74.8
39.5
Minor 5ss
46.6
-0.3
2.5
59.9
39.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017060
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029251
92701054 - 92712969
11916
ENSAPLT00000031126
92702272 - 92712984
10713
ENSAPLT00000029497
92698967 - 92712969
14003