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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92783800_92824803_R

Intron Information:

Intron Rank:
143824
Intron Class:
major
Intron Phase:
Intron Coordinates:
92783800 - 92824803
Intron Length:
41004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
TCCCCCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AACTTCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.7
0.58
0.8
68.6
30.3
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
54
0.12
1.5
61.03
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029328
92735614 - 92830928
95315