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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92824883_92830807_R

Intron Information:

Intron Rank:
143825
Intron Class:
major
Intron Phase:
Intron Coordinates:
92824883 - 92830807
Intron Length:
5925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTA
5'SS Class:
major
3'SS Sequence:
CTTCCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
68.7
38.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.8
0.56
0.7
65.8
30.2
Minor 5ss
39.3
-1.2
3.5
55.9
48.2
Minor BPS
70.7
0.63
1.3
77.35
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029328
92735614 - 92830928
95315