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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92889361_92890826_R

Intron Information:

Intron Rank:
148101
Intron Class:
major
Intron Phase:
Intron Coordinates:
92889361 - 92890826
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATTACCA
5'SS Class:
major
3'SS Sequence:
TTTTCACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACTTCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.1
53.5
37.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
86
27.2
Minor 5ss
40.1
-1.1
3
49.3
40.8
Minor BPS
58.1
0.33
1.7
73.75
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033315
92888911 - 92903039
14129