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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92904778_92904982_R

Intron Information:

Intron Rank:
131219
Intron Class:
major
Intron Phase:
Intron Coordinates:
92904778 - 92904982
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTCATTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.6
0.87
0.6
83.6
24.8
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
57.9
0.24
1.9
71
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017815
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030703
92904562 - 92910953
6392