Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92905062_92910821_R

Intron Information:

Intron Rank:

131220

Intron Class:

major

Intron Phase:

Intron Coordinates:

92905062 - 92910821

Intron Length:

5760

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

CCCTTTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTTTCTTATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.03

0.9

82.8

36.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

88.4

0.86

0.6

86.9

23.7

Minor 5ss

26.8

-2.7

3.9

39.4

46.1

Minor BPS

66.4

0.49

1.6

73.26

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017815

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030703

92904562 - 92910953

6392