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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_92987408_92990757_F

Intron Information:

Intron Rank:
150168
Intron Class:
major
Intron Phase:
Intron Coordinates:
92987408 - 92990757
Intron Length:
3350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCGTATT
5'SS Class:
major
3'SS Sequence:
TCCTGATCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTCTCCTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
83.1
35.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
67.9
0.4
1
62.2
37.7
Minor 5ss
37
-1.5
3
52
44.5
Minor BPS
57.4
0.23
1.8
67.94
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046190
92987069 - 92991039
3971