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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93021345_93022614_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93021345 - 93022614
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGCTTCTTCATA
Flanking Amino Acid:
KYQPIFEEQEVDMEAFLTLT
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.2
0.66
0.9
74.1
34.6
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
57.8
0.24
1.7
67
40.2

Associated Gene:

Gene:
ANKS6
Ensembl Gene ID:
ENSAPLG00000014196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014820
93015929 - 93061064
45136