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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93022683_93026824_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93022683 - 93026824
Intron Length:
4142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TAAAATTGATCT
Flanking Amino Acid:
GSSSGTITEDDELTGILKKL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
44.6
-0.3
1.8
61.17
41.8

Associated Gene:

Gene:
ANKS6
Ensembl Gene ID:
ENSAPLG00000014196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014820
93015929 - 93061064
45136