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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93031603_93033116_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
93031603 - 93033116
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGATCAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
EQMRTAWPQRMSVSKGTRPV
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.2
0.12
1.1
51.4
41.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
34.6
-1.7
2.9
36.2
41.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
ANKS6
Ensembl Gene ID:
ENSAPLG00000014196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014820
93015929 - 93061064
45136