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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93033279_93034316_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93033279 - 93034316
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TTTCGTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCGT
U12 Branch Point Sequence:
TTTTCCTTTCTT
Flanking Amino Acid:
GKNDELLTTMLRSSAPFTRL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
38.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.9
0.74
0.8
80.8
31.2
Minor 5ss
46.8
-0.3
2.5
58.3
41.6
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
ANKS6
Ensembl Gene ID:
ENSAPLG00000014196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014820
93015929 - 93061064
45136