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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93035133_93044664_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93035133 - 93044664
Intron Length:
9532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCAATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAATC
Flanking Amino Acid:
ILPDDKGGLKSWWSRMSNRF
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.1
0.47
0.9
63.5
37.2
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
60.4
0.31
1.5
65.51
41

Associated Gene:

Gene:
ANKS6
Ensembl Gene ID:
ENSAPLG00000014196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014820
93015929 - 93061064
45136