About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93044814_93046228_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93044814 - 93046228
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AGTATCTTAATT
Flanking Amino Acid:
FDLIMLLNDPDTELVRLLAS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
71.1
0.74
1.2
79.7
36

Associated Gene:

Gene:
ANKS6
Ensembl Gene ID:
ENSAPLG00000014196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014820
93015929 - 93061064
45136