Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93062375_93062488_F

Intron Information:

Intron Rank:

134114

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

93062375 - 93062488

Intron Length:

114

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ACG|GCGGCGGCT

5'SS Class:

weak_major

3'SS Sequence:

GCCGCAGGCGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCCGCAG

U12 Branch Point Sequence:

GCTGCCGCAGGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.8

0.04

1.3

38.5

Major BPS

36.5

-0.8

1.6

42.9

Major PPT

41.3

-0.5

1.6

34.1

34.8

Minor 5ss

20.7

-3.4

4.4

37.9

47.1

Minor BPS

34.9

-1.1

2.3

42.68

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022081

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043728

93062118 - 93063764

1647