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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93071324_93083119_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93071324 - 93083119
Intron Length:
11796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCCTTGCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TGCACTTTGACT
Flanking Amino Acid:
HRRLPERWHPLCKEKKYDYY
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
78.2
0.64
0.8
71.2
33.3
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
66.6
0.6
1.3
76.52
40.2

Associated Gene:

Gene:
GALNT12
Ensembl Gene ID:
ENSAPLG00000012197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012727
93070947 - 93117473
46527