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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93084178_93086923_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
93084178 - 93086923
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTA
5'SS Class:
major
3'SS Sequence:
AAAAACATCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
HEGWLEPLLERIAEEESAVV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69
38.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
51
0.02
1
45.3
40.9
Minor 5ss
38.3
-1.3
3.7
54.8
49.4
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
GALNT12
Ensembl Gene ID:
ENSAPLG00000012197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012727
93070947 - 93117473
46527