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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93096543_93098967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93096543 - 93098967
Intron Length:
2425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTAATT
Flanking Amino Acid:
YYHRNPHARLEPYGDVTERR
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
GALNT12
Ensembl Gene ID:
ENSAPLG00000012197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012727
93070947 - 93117473
46527