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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93099100_93106769_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93099100 - 93106769
Intron Length:
7670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTGTTTTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCCTTATCT
Flanking Amino Acid:
PEDRPGFFGMLKNKGMVNFC
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
72.5
0.51
1
74.6
40
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
85.6
1.19
1.4
100.1
28.3

Associated Gene:

Gene:
GALNT12
Ensembl Gene ID:
ENSAPLG00000012197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012727
93070947 - 93117473
46527