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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93113684_93116344_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93113684 - 93116344
Intron Length:
2661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AAAGCAAAAATT
Flanking Amino Acid:
PENQKFVFREDGTLFHVQTQ
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88
0.86
0.7
83.5
24.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
40.3
-0.6
2
54.71
40.7

Associated Gene:

Gene:
GALNT12
Ensembl Gene ID:
ENSAPLG00000012197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012727
93070947 - 93117473
46527