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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93126131_93126459_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93126131 - 93126459
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGGGGAGT
5'SS Class:
major
3'SS Sequence:
CCCCATCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
TCCCCCCCATCC
Flanking Amino Acid:
LPPGRGGRRGRMHPSPRRPA
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
60.8
45.3
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
63.9
0.31
0.9
58.3
31.3
Minor 5ss
27.6
-2.6
3.4
39.3
46.3
Minor BPS
42.8
-0.5
2
52.79
44.4

Associated Gene:

Gene:
GABBR2
Ensembl Gene ID:
ENSAPLG00000008633
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008978
93126051 - 93634837
508787