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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93233516_93357002_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93233516 - 93357002
Intron Length:
123487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTTGTCATTT
Flanking Amino Acid:
ESLKGWNLVQLSFAATTPEL
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
44.3
-0.3
2.3
67.09
44.5

Associated Gene:

Gene:
GABBR2
Ensembl Gene ID:
ENSAPLG00000008633
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028089
93125507 - 93635241
509735
ENSAPLT00000008978
93126051 - 93634837
508787