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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93408213_93443249_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93408213 - 93443249
Intron Length:
35037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
MNETNFFGVTGQVVFRNGER
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
74.5
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.8
0.71
0.8
82.2
34.4
Minor 5ss
34
-1.8
2.9
42
44.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
GABBR2
Ensembl Gene ID:
ENSAPLG00000008633
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028089
93125507 - 93635241
509735
ENSAPLT00000008978
93126051 - 93634837
508787