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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93477497_93480022_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93477497 - 93480022
Intron Length:
2526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTCTTGTAATT
Flanking Amino Acid:
EIINNSIRFQGLEPPKDKTI
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72.5
0.51
0.9
63.5
41.9
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
50.5
0.09
2
71.97
40.1

Associated Gene:

Gene:
GABBR2
Ensembl Gene ID:
ENSAPLG00000008633
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028089
93125507 - 93635241
509735
ENSAPLT00000008978
93126051 - 93634837
508787