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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93480174_93480655_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93480174 - 93480655
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATG
Flanking Amino Acid:
LFFNIKNRNQKLIKMSSPYM
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.3
0.7
0.8
75.9
32.8
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
77.5
0.72
1.2
74.65
38.4

Associated Gene:

Gene:
GABBR2
Ensembl Gene ID:
ENSAPLG00000008633
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028089
93125507 - 93635241
509735
ENSAPLT00000008978
93126051 - 93634837
508787