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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93507479_93600157_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93507479 - 93600157
Intron Length:
92679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAACC
Flanking Amino Acid:
RRTVEKYNMEPDPAGRDISI
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
54.1
0.11
1.5
62.76
36.2

Associated Gene:

Gene:
GABBR2
Ensembl Gene ID:
ENSAPLG00000008633
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028089
93125507 - 93635241
509735
ENSAPLT00000008978
93126051 - 93634837
508787