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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93682135_93687335_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93682135 - 93687335
Intron Length:
5201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
ACATTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATCTTTTCACA
Flanking Amino Acid:
QNTLWPEIQKLYGHGYEIFC
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.6
0.62
0.9
74.4
39.3
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
56.4
0.2
1.7
69.28
37

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719