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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93687394_93687520_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93687394 - 93687520
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TAATGTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATGTCTTACTA
Flanking Amino Acid:
EIYFQPLILTEPPPEDHLLQ
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.8
31.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.6
0.53
0.9
70.6
40.6
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
52.7
0.08
1.7
61.97
38.8

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719