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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93687617_93689199_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93687617 - 93689199
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTGTTTTGAATA
Flanking Amino Acid:
LGLSNKAVFEGDMPAQPAED
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
71.4
0.48
1
69.9
40.3
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
63.7
0.43
1.3
71.2
35.5

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719